There were no casualties reported in the remote village, close to the porous border with Somalia, and some 80 kilometers (50 miles) northeast of regional capital Garissa.
"Security forces on Thursday evening thwarted an attempted attack at Yumbis village," interior ministry spokesman Mwenda Njoka said in a statement Friday.
"Security forces swiftly mobilized and engaged the militants in a gun battle, no casualties were reported," Njoka was quoted by AFP as saying.
In April, Shebab gunmen massacred close to 150 people, most of them students, in a dawn attack on a university in Garissa.
Two days before this latest raid on Yumbis village Shebab militants briefly took control of a mosque in Garissa, delivering a hardline sermon to captive worshippers.
Thursday night's raid is the latest in a series of attacks and massacres in Kenya's northeast and its Muslim-majority coastal areas. In 2013 Shebab gunmen launched an assault on the Westgate shopping mall in the capital Nairobi that left at least 67 dead.
The Shebab has warned of a "long, gruesome war" unless Kenya withdraws its troops from Somalia, where they have been fighting the militants since 2011.