Ambulances rushed to the scene early on Thursday to treat the wounded.
Deputy Health Minister Gamal Al Gohary told the Dot Masr website there were no deaths after the accident. He said 44 people were injured and transported to Beni Suef Public Hospital.
The train collided with a concrete block that led it to derail, lifting the front of one of the carriages several meters into the air, Al Jazeera quoted the government website al-Ahram as reporting.
Egypt's roads and railways have a poor safety record and Egyptians have long complained that governments have failed to enforce basic safeguards.
In early 2015, a crash between a train and a bus carrying schoolchildren northeast of Cairo killed at least seven people.
Fifty people, mostly children, were killed when a train slammed into a school bus as it crossed the tracks at a rail crossing south of Cairo in 2012.